YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MYPR_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLECCARC LVGAPFASLV ATGLCFFGVA LFCGCGHEAL TGTEKLIETY FSKNYQDYEY  60
   61 LINVIHAFQY VIYGTASFFF LYGALLLAEG FYTTGAVRQI FGDYKTTICG KGLSATVTGG 120
  121 QKGRGSRGQH QAHSLERVCH CLGKWLGHPD KFVGITYALT VVWLLVFACS AVPVYIYFNT 180
  181 WTTCQSIAAP SKTSASIGTL CADARMYGVL PWNAFPGKVC GSNLLSICKT AEFQMTFHLF 240
  241 IAAFVGAAAT LVSLLTFMIA ATYNFAVLKL MGRGTKF

Type	Start	End	Confidence
Cytoplasmic	1	10	0.88
Transmembrane Helix	11	33	0.88
Non-Cytoplasmic	34	69	0.88
Transmembrane Helix	70	92	0.84
Cytoplasmic	93	152	0.94
Transmembrane Helix	153	177	0.88
Non-Cytoplasmic	178	239	0.90
Transmembrane Helix	240	266	0.86
Cytoplasmic	267	277	0.85