YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C90C1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.23
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPPASAGLF RSPENLPWPY NYMDYLVAGF LVLTAGILLR PWLWLRLRNS KTKDGDEEED  60
   61 NEEKKKGMIP NGSLGWPVIG ETLNFIACGY SSRPVTFMDK RKSLYGKVFK TNIIGTPIII 120
  121 STDAEVNKVV LQNHGNTFVP AYPKSITELL GENSILSING PHQKRLHTLI GAFLRSPHLK 180
  181 DRITRDIEAS VVLTLASWAQ LPLVHVQDEI KKMTFEILVK VLMSTSPGED MNILKLEFEE 240
  241 FIKGLICIPI KFPGTRLYKS LKAKERLIKM VKKVVEERQV AMTTTSPAND VVDVLLRDGG 300
  301 DSEKQSQPSD FVSGKIVEMM IPGEETMPTA MTLAVKFLSD NPVALAKLVE ENMEMKRRKL 360
  361 ELGEEYKWTD YMSLSFTQNV INETLRMANI INGVWRKALK DVEIKGYLIP KGWCVLASFI 420
  421 SVHMDEDIYD NPYQFDPWRW DRINGSANSS ICFTPFGGGQ RLCPGLELSK LEISIFLHHL 480
  481 VTRYSWTAEE DEIVSFPTVK MKRRLPIRVA TVDDSASPIS LEDH

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.65
Transmembrane Helix	21	44	0.85
Cytoplasmic	45	73	0.62
Transmembrane Helix	74	88	0.23
Non-Cytoplasmic	89	524	0.66