YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10121867
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.80
Transmembrane Helix	31	54	0.88
Non-Cytoplasmic	55	80	0.76
Transmembrane Helix	81	104	0.83
Cytoplasmic	105	111	0.70
Transmembrane Helix	112	133	0.91
Non-Cytoplasmic	134	139	0.65
Transmembrane Helix	140	166	0.77
Cytoplasmic	167	177	0.70
Transmembrane Helix	178	200	0.93
Non-Cytoplasmic	201	228	0.76
Transmembrane Helix	229	251	0.89
Cytoplasmic	252	271	0.71
Transmembrane Helix	272	288	0.70
Non-Cytoplasmic	289	293	0.63
Transmembrane Helix	294	311	0.88
Cytoplasmic	312	321	0.82
Transmembrane Helix	322	341	0.94
Non-Cytoplasmic	342	348	0.80
Transmembrane Helix	349	372	0.90
Cytoplasmic	373	381	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIRKSHPL FKIINHSFID LPAPSNISSW WNFGSLLGVC LMVQILTGLF LAMHYTSDTM  60
   61 TAFSSVTHIC RDVNYGWLIR YLHANGASMF FICLFLHVGR GLYYGSYTFL ETWNIGIILL 120
  121 FAVMATAFMG YVLPWGQMSF WGATVITNLL SAIPYIGTTL VEWIWGGFSV DKATLTRFFA 180
  181 FHFILPFIIA ALAIVHLLFL HETGSNNPTG LNSNADKIPF HPYYTIKDLL GVFMLLLFLM 240
  241 TLVLFFPDLL GDPDNYTPAN PLNTPPHIKP EWYFLFAYAI LCSIPNKLGG GREALILSIL 300
  301 ILAFLPFLHT SKQRSLTFRP ITQILYGILV ANLLVLTGIG GQPVEHPFII IGQLASISYF 360
  361 SIILILMPIS GIVEDKMLKW N