YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|628539
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.78
Transmembrane Helix	18	39	0.71
Non-Cytoplasmic	40	46	0.78
Transmembrane Helix	47	71	0.89
Cytoplasmic	72	82	0.84
Transmembrane Helix	83	102	0.94
Non-Cytoplasmic	103	114	0.75
Transmembrane Helix	115	139	0.84
Cytoplasmic	140	147	0.93
Transmembrane Helix	148	170	0.85
Non-Cytoplasmic	171	174	0.59
Transmembrane Helix	175	197	0.77
Cytoplasmic	198	207	0.80
Transmembrane Helix	208	233	0.72
Non-Cytoplasmic	234	254	0.82
Transmembrane Helix	255	274	0.91
Cytoplasmic	275	286	0.84
Transmembrane Helix	287	309	0.87
Non-Cytoplasmic	310	321	0.79
Transmembrane Helix	322	345	0.83
Cytoplasmic	346	355	0.78
Transmembrane Helix	356	377	0.92
Non-Cytoplasmic	378	383	0.88
Transmembrane Helix	384	404	0.95
Cytoplasmic	405	415	0.85
Transmembrane Helix	416	436	0.80
Non-Cytoplasmic	437	582	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPTVNAKTV TRNVGWSVLS KTGTFGLKFV TVPILARILS PEEFGAVAVA LTVVQFLAMI  60
   61 GGAGLTSALV IQQHEEMETV HSVFWANLAI ALMMALGLFV FAEPLATLLG APEAAYLLRI 120
  121 MSLLIPLQLG GDVAYSLLVR RMNFRKDAVW SMISESLGAV IAVLLALLGF GIWSLLAQLF 180
  181 VSALVRLSGL YAVSRYAPRF VFSLQRVLAL SRFSFGMMGS EIANFITFQS PMVVISRYLG 240
  241 LSDAGAYSAA NRFASIPNQV VLSAVMGVLF PTFGQMMHDR ERRSQALMLS TQVTTVLLAP 300
  301 MMFGLWALAE PAMLVLFGSQ WAYAWPVLGL LALSKGILTP CSTFIPYLKG VGQGAVLFWW 360
  361 ALIRAVATTG AVAYGAIDGS LVEAMIWLCI VNAVTLVGYS WVVFRADSTP FLKGLFISSR 420
  421 PMIAALLMAL VVRFLLEHFG AHVPNAVLQL IAGTHRQRDL HGSDPSDGAI AVAEAPGHGA 480
  481 STQAESRSRG SQPSSQTSPT AEERVTGQPA LLLPPGRGRG NGLRHAALPF DGNNMDVRDE 540
  541 RHYPLVDGRS PHRHYPALYV RLLTPRHRES FRLTSNSRAK YT