YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MRS26_ARATH
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLRRSTSN RSRKKGTAVK MNRMPSSLSP PTPPCSAIVG GTGKSKKRRG GVCLWTRFDR  60
   61 TGFMEVAGCD KSTIIERSSV SAKDLRTAFS HSSKILAREK AIVLNLEVIK AVITSEQVML 120
  121 LDSLRPEVLT LTDRLKHHFP RKDGPENILQ ASSHGHQEGG EEGLKSKLPF EFRVLEIAFE 180
  181 VFCSFVDSNV VDLETQAWSI LDELTKKVSN ENLKDLRSLK TSLTHLLARV QKVRDEIEHF 240
  241 LDDKEDMEDL YLTRKWIQNQ QTEAASNSIV SQPNLQRHTS NRISTSMVTE EDDIDDMEML 300
  301 LEAYFMQLEG MRNKILLMKE HIDSTEAYVK ILQNSRRNGL IHLMMLVNIG NYAITAGTVV 360
  361 VNLFGMNIPI GLYSTPDIFG YVVWAVVALC IVLFIVTVGY AKWKKLLD

Type	Start	End	Confidence
Cytoplasmic	1	339	0.91
Transmembrane Helix	340	364	0.81
Non-Cytoplasmic	365	379	0.75
Transmembrane Helix	380	401	0.93
Cytoplasmic	402	408	0.86