YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTG2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.92
Transmembrane Helix	7	28	0.94
Cytoplasmic	29	40	0.92
Transmembrane Helix	41	63	0.90
Non-Cytoplasmic	64	79	0.83
Transmembrane Helix	80	100	0.92
Cytoplasmic	101	111	0.89
Transmembrane Helix	112	132	0.91
Non-Cytoplasmic	133	151	0.88
Transmembrane Helix	152	173	0.92
Cytoplasmic	174	326	0.94
Transmembrane Helix	327	342	0.53
Non-Cytoplasmic	343	345	0.44
Transmembrane Helix	346	369	0.84
Cytoplasmic	370	386	0.49
Transmembrane Helix	387	408	0.80
Non-Cytoplasmic	409	435	0.68
Transmembrane Helix	436	456	0.89
Cytoplasmic	457	467	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYGWGIFEG MLVIGSLCLL GSAGLWFLNR RLYKEYEEKR ALVQIIFSVV FAFSCNLLQL  60
   61 VLFEIIPVLS REARMVNWKV DLFCLIVLLV FMLPYYHCYL MLRNTGVRRE RAAVGALLFL 120
  121 TAFLYAFWRM GIHFPMPSDK GFFSMPQLVS RIGVIGVTLM AVLSGFGAVN LPYSYISLFI 180
  181 REIEESEIKS LERQLMQSME TCIAKKKKIL LCQVEVERSL VSEEHQKGKS FFRRFVGTVV 240
  241 RSVQDDQKEQ DIKLMEAEVE GLEELSKQLF LEIYELRQAK DAAAFSRTWK GHVQNFLGYA 300
  301 CSIYCVYKML KSLQSVVFKE AGTKDPVTMM ISIFLQFFDI GVDAALLSQY ISLLFIGMLI 360
  361 VISVRGFLTN LMKFFFAVSR VGSGSSSNVV LFLSEIMGMY FLSSILLIRK SLRNEYRGII 420
  421 TDVLGGDIQF DFYHRWFDAI FVASAFLSLL LLSAHYTSRQ IDKHPID