YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186514118, gi...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSNSEKRW IFPLAMASLM FIFLIAASFN MGLLSSVRSI NSLIFSYNLS TTNETRVEFA  60
   61 ESKINQSSHP PPVQPSLPRF GYLVSGSRGD LESLWRVLRT LYHPRNQYVV HLDLESPAEE 120
  121 RLELAKRVSQ DPVFSDVGNV HMITKANLVT YRGPTMVANT LHACAILLKQ SKEWDWFINL 180
  181 SASDYPLVTQ DDLIDTFSGL DRNLNFIDHS SKLGWKEEKR AKPLIIDPGL YSTKKSDVFW 240
  241 VTPRRTMPTA FKLFTGSAWM VLSRSFVEYC IWGWDNLPRT LLMYYTNFLS TPEGYFHTVI 300
  301 CNAPEYSSTV LNHDLHFISW DRPPKQHPRA LTINDTERMI ASGSAFSRKF RHNDPALDKI 360
  361 DKELLGRGNG NFTPGGWCAG EPKCSRVGDP SKIKPGPGAN RLRVLVSRLV LTSKLTQRQC 420
  421 R

Type	Start	End	Confidence
Cytoplasmic	1	9	0.90
Transmembrane Helix	10	33	0.84
Non-Cytoplasmic	34	421	0.98