YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23498707
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPRLQ QLDLLEEEQL GGVGFRQTRG YKSLAGCLGH GPLVLQLLSF TLLAGLLVQV  60
   61 SKVPSSLSQG QSKQDAIYQN LTQLKVAVSE LSEKSKQQEI YQELTRLKAA VGELPEKSKQ 120
  121 QEIYEELTRL KAAVGELPEK SKLQEIYQEL TRLKAAVGEL PEKSKQQEIY QELSRLKAAV 180
  181 GELPEKSKQQ EIYQKLTQLK AAVDGLPDRS KQQEIYQELI QLKAAVERLC HPCPWEWTFF 240
  241 QGNCYFMSNS QRNWHDSITA CQEVGAQLVV IKSAEEQNFL QLQSSRSNRF TWMGLSDLNH 300
  301 EGTWQWVDGS PLLPSFKQYW NKGEPNNIGE EDCAEFSGNG WNDDKCNLAK FWICKKSAAS 360
  361 CSGDEERLLS PAPTTPNPPP A

Type	Start	End	Confidence
Cytoplasmic	1	35	0.83
Transmembrane Helix	36	58	0.79
Non-Cytoplasmic	59	381	0.99