YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PSD3_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNGNSTETK ESRRSKMRKK IQNFRSRRRL SRPGSGSVSG LASQRSVSAD DFAGIALLTL  60
   61 IGAEMKFKDK WLACVSFGEQ TFRSEISDST EKPIWNSEKK LLLEKNGPSL ARISVFETNR 120
  121 LLKNNIVGYC ELDLLDFVVQ EPDSTCKSFD LLDPASSNVV GSMFVSCSVE DPVETETCFA 180
  181 KRILSIVDYD EDGKLSFSEF SDLMNAFGNV VAANKKEELF KAADLNGDGV VTIDELAALL 240
  241 AVQQEQEPII NSCPVCGEAL QLDKLNAMIH MTLCFDEGTG NQMTGGFLTD RQASYGWMFK 300
  301 LSEWTHLSTY DVGLNTGSSA SHIVVIDRKT KRLVEELIDS KIVMSMRAIY QSKIGLRLMD 360
  361 QGAKEILQNL SEKQGKKMNS VESAQNIPSF LEFFKDQINM AEVKYPLDHF KTFNEFFVRE 420
  421 LKPGARPIAC MDQDDVAVSA ADCRLMAFQS VDDSTRFWIK GRKFSIKGLL GNDVQSDAFL 480
  481 DGSLVIFRLA PQDYHRFHSP VSGVIEKFVN VSGSLYTVNP IAVNSKYCNV FTENKRTIVI 540
  541 ISTAEFGKVA FVAIGATMVG SISFVRQEGD HVKKGDELGY FSFGGSTVIC VFEKDSIKID 600
  601 EDLLANSARS LETLVTVGMQ LGVSFPKLEN CVLEP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle