YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CRK21_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.46
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKNKMVDLR AIFWFVVISS CAVAAPTCIQ RSDFFKANGP YDINLRAMLS SLPSRVKDNE  60
   61 GFYKTPFKPG PNIAHGLGMC SRGTTTQDCS DCITSVSHTL LHTCPNQAEA IDWSSGDSLC 120
  121 LVRYSNHLIN GSLDEDIIWA EYIEYKYNTS FGQTNLTEFK STWQALMDRV INKVDGSLYA 180
  181 NSIQELGSFP FRSIYAIAQC NKDLTKLNCE KCLQHLRIDN RSCCRGIQVG YIARTSCFMR 240
  241 WDLQPFLGLF INGMLPTPPS ELDNGHSNTT KKDGKNISTG SIVAIAVVSV VVSTVLLALG 300
  301 YAVSRRRKAY QSFASENGYF SVSRRPRRPY GTASPDDATD DLTASSGSLR FDFRAIKAAT 360
  361 SNFHKSNKLG HGGFGAVYKG MFPNGTEVAA KRLSKPSDQG EPEFKNEVLL VARLQHKNLV 420
  421 GLLGFSVEGE EKILVYEFVP NKSLDHFLFD PIKRVQLDWP RRHNIIEGIT RGILYLHQDS 480
  481 RLTIIHRDLK ASNILLDAEM NPKIADFGLA RNFRVNQTEA NTGRVVGTFG YMPPEYVANG 540
  541 QFSTKSDVYS FGVLILEIIG GKKNSSFHQI DGSVSNLVTH VWRLRNNGSL LELVDPAIGE 600
  601 NYDKDEVIRC IHIGLLCVQE NPDDRPSMST IFRMLTNVSI TLPVPQPPGF FFRERSEPNP 660
  661 LAERLLPGPS TSMSFTCSVD DASITSVRPR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle