YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SMO12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPYATIEEA SIALSRNLTW LETLWFDYSA TKSDYYLYCH NILFLFLIFS LVPLPLVFIE  60
   61 SSQSTSDLFN RYKIQPKVKN SFSSMFKCYK DVMKMFILVV GPLQLVSYPS IQMIEIRSGL 120
  121 PLPSCMEIVA QLVVYFLVED YTNYWVHRFF HCKWGYEKFH HIHHEYTAPI GYAAPYAHWA 180
  181 EVLLLGIPTF LGPAIAPGHM ITFWLWIALR QIEAIETHSG YDFPWSLTKY IPFYGGAEYH 240
  241 DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLQQ MKEKSKKSNK LVNGGEKFD

Type	Start	End	Confidence
Cytoplasmic	1	36	0.75
Transmembrane Helix	37	59	0.86
Non-Cytoplasmic	60	91	0.71
Transmembrane Helix	92	111	0.54
Cytoplasmic	112	118	0.50
Transmembrane Helix	119	138	0.49
Non-Cytoplasmic	139	183	0.85
Transmembrane Helix	184	207	0.77
Cytoplasmic	208	299	0.82