YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42572989
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGGFALIVY LGHLYITAMV VVIQIFMARE LFNLLRKTHE DKQLPGFRLL NWHFFFTAML  60
   61 FVYGRILSQR LVNTVTPDKV LYRLVTSLIK YHMAICYSLY ISGFVWFILT LKKKMYKYQF 120
  121 SQYAWTHMIL IVVFTQSSFT VANIFEGIFW FLLPASLIVI NDIFAYICGF FFGRTPLIKL 180
  181 SPKKTWEGFI GASITTVISA FLLANIMGRF LWLTCPREDL STGWLLCDPG PLFKQETHAL 240
  241 PGWISDWLPW KEISILPVQW HALCLGLFAS IIAPFGGFFA SGFKRAFKIK DFGDSIPGHG 300
  301 GITDRMDCQM VMAVFAYIYH QSFVVPEVLS VDKLLDQIIT SLTLEEQQAL LVKLGQMLQE 360
  361 KVIGS

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.92
Transmembrane Helix	7	28	0.93
Cytoplasmic	29	48	0.92
Transmembrane Helix	49	67	0.97
Non-Cytoplasmic	68	87	0.96
Transmembrane Helix	88	110	0.91
Cytoplasmic	111	122	0.90
Transmembrane Helix	123	142	0.93
Non-Cytoplasmic	143	150	0.65
Transmembrane Helix	151	173	0.89
Cytoplasmic	174	187	0.82
Transmembrane Helix	188	207	0.91
Non-Cytoplasmic	208	257	0.94
Transmembrane Helix	258	280	0.93
Cytoplasmic	281	365	0.95