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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SRF3_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKRSIYCL LLLPLLLSLL IWIPSISLAA TNPDDVAAIN GLFAALGAPV LPGWIASGGD  60
   61 PCGEAWQGII CNVSDIISIT VNAANLQGEL GDNLAKFTSI RGIDFSNNRI GGSIPSTLPV 120
  121 TLQHFFLSAN QFTGSIPESL GTLSFLNDMS LNDNLLSGEL PDVFQNLVGL INLDISSNNI 180
  181 SGTLPPSMEN LLTLTTLRVQ NNQLSGTLDV LQGLPLQDLN IENNLFSGPI PDKLLSIPKF 240
  241 LHEGNPFNAT MINSTSTAPS LSPSLSPTKP APTRPFSGVP PPPNERNRGK VADGPSDSEG 300
  301 SSSENSKGKN SSHTKKIILI AFAGVLVFII LVLAILLLLP KCARRREHAN RVFKPHQVGA 360
  361 DRGSRENALE NGTPVLPPPG RSEKVQREPF KKAGEEPKVL HDLERLRRPA PISRQESQDI 420
  421 DFSMLMPPPP PPPPPPPPPP LDEKVTVMPI ISPERPVKKT SPKRLPLTSV KHYSIASLQQ 480
  481 YTESFAQENL IGSGMLGSVY RARLPNGKLF AVKKLDKRAS EQQQDHEFIE LVNNIDMIRH 540
  541 SNIVELVGYC AEHDQRLLVY EYCSNGTLQD GLHSDDEFKK KLSWNTRVSM ALGAARALEY 600
  601 LHEVCEPPII HRNFKSANVL LDDDLSVLVS DCGLAPLISS GSVSQLSGQL LAAYGYGAPE 660
  661 FDSGIYTWQS DVYSFGVVML ELLTGRMSYD RDRSRGEQFL VRWAIPQLHD IDALGKMVDP 720
  721 SLNGQYPAKS LSHFADIISR CVQSEPEFRP LMSEVVQDLL DMIRRERHGS GDSTAD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle