YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATCA4_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTNAKTIFF MAMCFIYLSF PNISHAHSEV DDETPFTYEQ KTEKGPEGWG KINPHWKVCN  60
   61 TGRYQSPIDL TNERVSLIHD QAWTRQYKPA PAVITNRGHD IMVSWKGDAG KMTIRKTDFN 120
  121 LVQCHWHSPS EHTVNGTRYD LELHMVHTSA RGRTAVIGVL YKLGEPNEFL TKLLNGIKAV 180
  181 GNKEINLGMI DPREIRFQTR KFYRYIGSLT VPPCTEGVIW TVVKRVNTIS MEQITALRQA 240
  241 VDDGFETNSR PVQDSKGRSV WFYDPNV

Type	Start	End	Confidence
Signal Peptide	1	26	0.89
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	267	0.99