YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GSO1_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPLVLLLLF ILCFSGLGQP GIINNDLQTL LEVKKSLVTN PQEDDPLRQW NSDNINYCSW  60
   61 TGVTCDNTGL FRVIALNLTG LGLTGSISPW FGRFDNLIHL DLSSNNLVGP IPTALSNLTS 120
  121 LESLFLFSNQ LTGEIPSQLG SLVNIRSLRI GDNELVGDIP ETLGNLVNLQ MLALASCRLT 180
  181 GPIPSQLGRL VRVQSLILQD NYLEGPIPAE LGNCSDLTVF TAAENMLNGT IPAELGRLEN 240
  241 LEILNLANNS LTGEIPSQLG EMSQLQYLSL MANQLQGLIP KSLADLGNLQ TLDLSANNLT 300
  301 GEIPEEFWNM SQLLDLVLAN NHLSGSLPKS ICSNNTNLEQ LVLSGTQLSG EIPVELSKCQ 360
  361 SLKQLDLSNN SLAGSIPEAL FELVELTDLY LHNNTLEGTL SPSISNLTNL QWLVLYHNNL 420
  421 EGKLPKEISA LRKLEVLFLY ENRFSGEIPQ EIGNCTSLKM IDMFGNHFEG EIPPSIGRLK 480
  481 ELNLLHLRQN ELVGGLPASL GNCHQLNILD LADNQLSGSI PSSFGFLKGL EQLMLYNNSL 540
  541 QGNLPDSLIS LRNLTRINLS HNRLNGTIHP LCGSSSYLSF DVTNNGFEDE IPLELGNSQN 600
  601 LDRLRLGKNQ LTGKIPWTLG KIRELSLLDM SSNALTGTIP LQLVLCKKLT HIDLNNNFLS 660
  661 GPIPPWLGKL SQLGELKLSS NQFVESLPTE LFNCTKLLVL SLDGNSLNGS IPQEIGNLGA 720
  721 LNVLNLDKNQ FSGSLPQAMG KLSKLYELRL SRNSLTGEIP VEIGQLQDLQ SALDLSYNNF 780
  781 TGDIPSTIGT LSKLETLDLS HNQLTGEVPG SVGDMKSLGY LNVSFNNLGG KLKKQFSRWP 840
  841 ADSFLGNTGL CGSPLSRCNR VRSNNKQQGL SARSVVIISA ISALTAIGLM ILVIALFFKQ 900
  901 RHDFFKKVGH GSTAYTSSSS SSQATHKPLF RNGASKSDIR WEDIMEATHN LSEEFMIGSG 960
  961 GSGKVYKAEL ENGETVAVKK ILWKDDLMSN KSFSREVKTL GRIRHRHLVK LMGYCSSKSE1020
 1021 GLNLLIYEYM KNGSIWDWLH EDKPVLEKKK KLLDWEARLR IAVGLAQGVE YLHHDCVPPI1080
 1081 VHRDIKSSNV LLDSNMEAHL GDFGLAKVLT ENCDTNTDSN TWFACSYGYI APEYAYSLKA1140
 1141 TEKSDVYSMG IVLMEIVTGK MPTDSVFGAE MDMVRWVETH LEVAGSARDK LIDPKLKPLL1200
 1201 PFEEDAACQV LEIALQCTKT SPQERPSSRQ ACDSLLHVYN NRTAGYKKL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle