YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP10_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTADQELQII VRQGKEPNPT VQDERNSVSS SQAEVSHSNT YKRWLRVTLY TFFVISGQTV  60
   61 ATILGRVYYD NGGNSKWLAT VVQLVGFPVL LPYYILSFKT HATTDRDGKR TSPRNRVLVY 120
  121 VVLGLLVGAD CYLYSIGLLY LPVSTYSLIC ASQLAFNAFF SYFLNSQKLT PIILNSLFLL 180
  181 TISSTLLAFN NEETDSTKVT KGEYVKGFIC TVAASAGYGL VLSLQQLAFL KVLKKQNFSE 240
  241 VMDMIIYVSL VASCVSVVGL FASSEWKTLS SEMDNYKHGK VSYIMNLVWT AVTWQVFSIG 300
  301 GTGLIFELSS LFSNAISVLG LPVVPILAVI IFHDKMNGLK VISMILAIWG FTSYVYQQYL 360
  361 DDKNLKKNHE ITTTESPDPP EAEESTWQSK

Type	Start	End	Confidence
Cytoplasmic	1	46	0.98
Transmembrane Helix	47	69	0.89
Non-Cytoplasmic	70	76	0.90
Transmembrane Helix	77	96	0.96
Cytoplasmic	97	116	0.93
Transmembrane Helix	117	136	0.97
Non-Cytoplasmic	137	168	0.51
Transmembrane Helix	169	189	0.83
Cytoplasmic	190	203	0.52
Transmembrane Helix	204	229	0.78
Non-Cytoplasmic	230	243	0.55
Transmembrane Helix	244	264	0.93
Cytoplasmic	265	282	0.54
Transmembrane Helix	283	306	0.81
Non-Cytoplasmic	307	310	0.52
Transmembrane Helix	311	332	0.89
Cytoplasmic	333	390	0.50