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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|22328760
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKSSKKND GGNQKVSFFK LFSFADKTDV VLMTVGTIAA AGNGLTQPFM TLIFGQLINA  60
   61 FGTTDPDHMV REVWKVAVKF IYLAVYSCVV AFLQVSCWMV TGERQSATIR GLYLKTILRQ 120
  121 DIGYFDTETN TGEVIGRMSG DTILIQDAMG EKVGKFTQLL CTFLGGFAIA FYKGPLLAGV 180
  181 LCSCIPLIVI AGAAMSLIMS KMAGRGQVAY AEAGNVVEQT VGAIRTVVAF TGEKQATEKY 240
  241 ESKLEIAYKT VVQQGLISGF GLGTMLAVIF CSYGLAVWYG AKLIMEKGYN GGQVINVIFA 300
  301 VLTGGMSLGQ TSPSLNAFAA GRAAAFKMFE TIKRSPKIDA YDMSGSVLED IRGDIELKDV 360
  361 YFRYPARPDV QIFAGFSLFV PNGKTVALVG QSGSGKSTVI SLIERFYDPE SGQVLIDNID 420
  421 LKKLQLKWIR SKIGLVSQEP VLFATTIKEN IAYGKEDATD QEIRTAIELA NAAKFIDKLP 480
  481 QGLDTMVGEH GTQMSGGQKQ RLAIARAILK NPKILLLDEA TSALDAESER IVQDALVNLM 540
  541 SNRTTVVVAH RLTTIRTADV IAVVHQGKIV EKGTHDEMIQ DPEGAYSQLV RLQEGSKEEA 600
  601 TESERPETSL DVERSGSLRL SSAMRRSVSR NSSSSRHSFS LASNMFFPGV NVNQTDEMED 660
  661 EENNVRHKKV SLKRLAHLNK PEIPVLVLGS IAAMVHGTVF PIFGLLLSSS INMFYEPAKI 720
  721 LKKDSHFWAL IYIALGLTNF VMIPVPNYFF GIAGGKLIKR IRSMCFDKVV HQEISWFDDT 780
  781 ANSRSLVGDA LALIVQNIAT VTTGLIIAFT ANWILALIVL ALSPFIVIQG YAQTKFLTGF 840
  841 SADAKAMYEE ASQVANDAVS SIRTVASFCA EEKVMDLYQQ KCDGPKKNGV RLGLLSGAGF 900
  901 GFSFFFLYCI NCVCFVSGAG LIQIGKATFG EVFKVFFALT IMAIGVSQTS AMAPDSNKAK 960
  961 DSAASIFDIL DSTPKIDSSS DEGTTLQNVN GDIEFRHVSF RYPMRPDVQI FRDLCLTIPS1020
 1021 GKTVALVGES GSGKSTVISM IERFYNPDSG KILIDQVEIQ TFKLSWLRQQ MGLVSQEPIL1080
 1081 FNETIRSNIA YGKTGGATEE EIIAAAKAAN AHNFISSLPQ GYDTSVGERG VQLSGGQKQR1140
 1141 IAIARAILKD PKILLLDEAT SALDAESERV VQDALDRVMV NRTTVVVAHR LTTIKNADVI1200
 1201 AVVKNGVIAE KGRHETLDED FRWCLCFSCH SAHECKLRDF LFLVGMKERI FGIDSLICPL1260
 1261 ELINLRQTDP FTSSFKSLVP H

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle