YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|21038943
Protein type: Globular with Signal Peptide
Type Confidence: 0.97
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLHLTLCA LLVLLTPTEE RVTRRHVPEE GSTRTKRAHI PPLSSPSFRR DAVESPPEVS  60
   61 EISDRHAAYT NRDQYGTRSL PLRTAVERVP DLIEDSIRVP LRDAVEKRPP PDEPDDVDDF 120
  121 ELDNNEYQFY YYPPRVSLYT PIQYFRDLIS EQYVSVPYRI DNVSQQLIRY PARGRSLFGD 180
  181 NPFLRGRHSE IVETVYDPRE EQDRVVCYVQ AAATYRKEPL SFSPEDLDPY ACTHVIYAFA 240
  241 SIDPHTFNMI SNDDEFDIIQ GGYRSVTGLK RLNPKLKVLI SVGEGRQDGS HRFSSMVSSA 300
  301 NRRREFIRSA IGLIKQYNFD GMDIHWEYPG AEELGGQLSD KEYLNLFLEE LSEIFKPRGW 360
  361 LLSIAVPASR FRVEDGFNPQ RLGSLVDFVN LQAFDFHRER DPVADHHSNL YPRPHDNGLD 420
  421 LFLSVDYAVK FWIKKGLPKS KIIVGIPFFG RSFTLQYSNE TQEGAAIKGP GREGFYTQNP 480
  481 GYLAYFEICD MLLNEGWHKG VDEAGAPYMV YGDQWVGYDD AESVERKVNY VQEMNLGGVF 540
  541 VWAADLDDFK GVCGVKWPLL STINRHLRGN ELLPLQQHTD APTKPYGTCR SEGLFTDPRN 600
  601 CAAYYICRSG LSYHLSCADN MMFDPANGRC EFSLGEKCRP GQIMQVPNSL RLFDHLLKAE 660
  661 APKDDRPKVV CYMTNWAFYR KGEGKFVPEH IDQRLCTHVI YAFASLDPDK LLLKEFDPWA 720
  721 DLDNNLYERV TSFQDTKVLL SLGGWTDSAG DKYSRLVGDG SARRRFVIGV VSFLRRHHFR 780
  781 GLHFDWNYPV CWQSNCKKGA SSDKPNFTKL IQELRREFDK QKPPMILAAA ISGYKEVIDV 840
  841 AYDLQSLGGA LDFMSVMTYD YHGAWERQTG HVSPLYHRQG DKYPQYNTNY TMEYLVAKGA 900
  901 PREKLLVGIP FYGQSFTLSK TNNHGQGVPS AGPGEAGEYT KQPGMLAYYE ICARIRNQRW 960
  961 IVTPDSTGAT GPFAYHGEQW VGFEDVTSVR KKASYIKSSG FGGAVAWTID LDDFSNRCCG1020
 1021 GSFPLLRSLN RGLGLIPDTP SREDCTKPPE PVTPAPPQTT TGVDTGASST EHMHPEWTKP1080
 1081 TTKPTTSSWW STTTSPWWTT TTTRRTTTTR RTTTTRRTTT TRPSTTTTSW PTHATTIPPP1140
 1141 AVVMPEVDKP PQPCEPGQYL PDPQNCNAYY RCVLGELRKQ YCAGGLHWNK ERKVCDWPKE1200
 1201 AKCQEHKPGH KPTTPSWQKP TTTSWQKPTT TSWQRPTTTS WQKPTTTSWQ RPTTRPPYRP1260
 1261 TTTSHWQTKT TSTPRPTTTS GTTSSQLVND KCSPGQYYPH ESCSSFYVCV NGHLVPQNCA1320
 1321 PGLHYNTQEH MCDWKYKVKC VGRKELAQMY QLPKMSFDHP QPYSACGGEN AFAAYPKDCT1380
 1381 RYLHCLWGKY EVFNCAPGLH WSNERQICDW PEKAKCDGTS SISVAEIATM KPTEAPVHSS1440
 1441 TESGSTPPSS TSRKPPTSTS YPEWQPTEWH PPIPPTSEKP PLPEPLKPQS GYFKIVCYFT1500
 1501 NWAWYRKGIG RYLPEDIDPD LCTHIVYGFA VLDFEKLIVK AHDSWADFDN QFYKRVTGYK1560
 1561 AKGVKVSLAL GGWNDSQGDK YSRLVNNPAA RARFIKHVLE FLEKWDFDGL DLDWEYPKCW1620
 1621 QVDCKKGPDS DKQAFADWVT EIKAAFKPKG YLLSAAVSPS KTVIDAGYDV PVLAQNLDWV1680
 1681 AVMTYDFHGQ WDKQTGHVAP LYYHPEDEVA FYNANFSINY WISEGVPRRK IVMGMPLYGQ1740
 1741 SFRLEKESNH GLNAKAPGPG QAGEHTRAAG FLAYYEICHN IKSQGWTVVQ DPKRRMGPYA1800
 1801 YRGDQWVSFD DREMIRRKSE FIRKMDLGGG MIWARDLDDF KNRCGEGRHP LLTTIRNVLA1860
 1861 DAGTGQQEPI PPIDTEEPSK PPYKPEPVEA EHTEPPPSVH SSTLEPSPTH GTTQQALVNP1920
 1921 NSEFKVVCYF TNWAWYRQGP GKYLPSDIDP DLCTHIVYGF AVLNGDQLII KPHDTWADFD1980
 1981 NKFYEKVTAF KAKGIKVLIA IGGWNDSAGD KYSRLVNNPS SRRRFIAHVV DFIENNNFDG2040
 2041 LDLDWEYPKC WQVDCNKGPA SDKSSFAEFV KELHEAFTPK GWLLSAAVSP SRRVVDAGYD2100
 2101 VPTLSRYLDW IAVMCYDYHG QWDKITGHVA PMYAHPDDVD ATFNTNFTIH YWIEKGADRK2160
 2161 KLVMGMPMYG QSFSLADNNQ NGVNAPTYGG GEAGEETRAR GFLSYYEICT NVINKGWTVV2220
 2221 RDRRGRIGPY AHLRDQWVSF DDIGMIRHKS EFIRAMGLGG GMIWALDLDD FRNLCGCEEY2280
 2281 PLLRTINRVL RDYAKPDPKC ILGKASSKPT QKPTPKPTQK PTPKPTQKPT PKPSTPPYEP2340
 2341 QKPSTQKPSY GTTESPEPVM PPDSVPCRGR LFVADEKNCN QYYLCNQGEL QLQVCPNGLF2400
 2401 WNRDHCDWPE NTECHPDGTT TAAPSTTTQT LEVEVPEVEV PEPVTTPAAP VGGTDVTEGA2460
 2461 YKVVCYFTNW AWYRQGDGKY LPQDIDASLC THINYGFAVL DGSTMTLKPH DSWADIDNEF2520
 2521 YKKVVAFKSR GIKVLIALGG WNDSAGSKYR LVNDPQARAR FVAHALEFIE KWGFDGLDLD2580
 2581 WEYPKCWQVD CNKGPDSDKE NFANLVRELS LAFKPKGLLL SAAVSPSKAV IDAGYDVPTL2640
 2641 SRYFDWIAVM TYDFHGHWDK QTGHVAPLYY YPGDAYDYFN ANFSLNYWIE KGASPSKLVM2700
 2701 GMPLYGQSFS LADSGDRGLN ANPTPGEAGE FTRAGGFLSL YEICERVKKR GWTVTRDPHG2760
 2761 RIGPYAYMSN QWVSYDDVAE IRRKSRLIKD LHLGGGMIWA LDLDDFRNRC GCGKHPLLKT2820
 2821 MNNELRGTPS DISVLNCT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle