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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|30681973
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPPVSDLES IEDQKEGGPS FHCDLYDTQV VHKIAQVFLP GLATACVDNT TGDIFRSPGS  60
   61 VAADIRKEMI EYLTRRSETF VAEHIVLQGG SEIEASHDPF DIISDFIDDF ATSKRNLFSR 120
  121 VSGWMLSERR EDNIDDFAQE MEISGFWLTD HREGIAQTLL KNVDFKSSAH CEMKFQTEGE 180
  181 LAEHAMNCGY RTMNCENEGC TAVFCANQME NHDSVCPFKI IPCEQNCSES IMRRDMDRHC 240
  241 ITVCPMKLVN CPFHSVGCLS DVHQCEVQQH HLDNVSSHLM YILRSIYKEA SLDDLKPRAE 300
  301 QIQQLSTRLS EARNARSLTN LVKEIDGKLG PLEIKPKIVT DSESDKPENT EKKALEEAEI 360
  361 KEKPETSNLK AVTLEQTARE APEDKLVSKE VDAAMVKEAA KKVSEAEIAD NVNEEGELKA 420
  421 QKLLEIGEFI KEGDNNSADD LSERTETKAP EVVVMDEARE EEDSVETKDT RTYETIRGLE 480
  481 IEANEMIDEE TKKSTETKTE APSRIVMDKE GDEETKKSTE TETEAPSRIV METEKDEETM 540
  541 NSRARASDEA EALSKSSQVA SMELSISQSP RVRFSSLAPR FLAASHHHRP SVHLAGKFIS 600
  601 LPRDVRFTSL STSRMRILAV ALTFKSRCVY VNYEIPKDQI LVGAAESDDP VLDRIARFQN 660
  661 ACWRFLRPHT IRGTALGSTA LVTRALIENT HLIKWSLVLK ALSGLLALIC GNGYIVGINQ 720
  721 IYDIGIDKVN KPYLPIAAGD LSVQSAWLLV IFFAIAGLLV VGFNFGPFIT SLYSLGLFLG 780
  781 TIYSVPPLRM KRFPVAAFLI IATVRGFLLN FGVYHATRAA LGLPFQWSAP VAFITSFVTL 840
  841 FALVIAITKD LPDVEGDRKF QISTLATKLG VRNIAFLGSG LLLVNYVSAI SLAFYMPQVF 900
  901 RGSLMIPAHV ILASGLIFQT WVLEKANYTK EAISGYYRFI WNLFYAEYLL FPFL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle