YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22330983
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAYILKNK DSFSYFVLLA FDASGLIRFT VMLFHWPITK LLDVLRYNNA ALKLMIFIAT  60
   61 VGLCEGEIEA VARTVLPKFY MDDVSMDTWR VFSSCKKRVV VTGMPRVMVE IRSPRSILEP 120
  121 IMSSIHALVM HSRKIELQPV PVIFNDGRLV KRPTPATALL ILIWIPFGMV LSPIRILSGF 180
  181 ILPMWIRTHA MSILGCQIIV KGKPSQPREA VKSGVLFVWS LLLYTPFHGF PNSSLPFPYI 240
  241 VRIQRIRDVD AKTIKLDLVI CPEGSTCRQP FLLRFSALFA ELTDMIVPVA VNYRVGFFHA 300
  301 NTVRGWNCMD MIFFFMNPRP GYEVTFLNKL PVEATCLSGK KPYDVANHVQ RILADTLGFE 360
  361 CTNLTRKDKY KVLTGKDGTV SYVSFQDQAK KVVNNFNPFS H

Type	Start	End	Confidence
Cytoplasmic	1	12	0.73
Transmembrane Helix	13	36	0.80
Non-Cytoplasmic	37	49	0.61
Transmembrane Helix	50	68	0.56
Cytoplasmic	69	155	0.83
Transmembrane Helix	156	177	0.87
Non-Cytoplasmic	178	184	0.57
Transmembrane Helix	185	200	0.75
Cytoplasmic	201	209	0.75
Transmembrane Helix	210	230	0.79
Non-Cytoplasmic	231	401	0.79