YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10303240
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKIFLPTE YFYLKRACNL YGQLHISEDN VVVYYVVDAD NNKLDSDTNK MRFLGSILCS  60
   61 DSYADSNYCR SHDVVLCFTY SNDAPNVSLM FTGITPENLN QVKLILYDKQ TVRSLVIKDN 120
  121 NTLAHWTREN QINDECDFYM LAQLVQPNPD TCRKSNDLWF YGSQSLCLLA NIPMQMFQYI 180
  181 VGNKFINSII THTVIYRHYK EWQSIYTKGS RLSNIMIDRA LGIILMLVLF TLVSHPGDFL 240
  241 IQISHIIIHQ LYSLLKVLEG SPIGLKLNIH LNNFFLDCFK YHIELWSTFL DLIEPIVRQV 300
  301 FLAIGAFGCL GFTYQIALLA DLISIVGLHA HCFYVYTKVL NNVEVKGLTV LWQVVRGNRY 360
  361 NILRNRIEAH NYMNRQLYLA TIFFSAILFL FPTTLVYYVV FATLKALTCA TLATLECFRR 420
  421 KLLNFPIEMF LKYIKKGFYE IDCLRVLDIP LQKPLFFIHR NSKLIIFVYK LRV

Type	Start	End	Confidence
Cytoplasmic	1	214	0.80
Transmembrane Helix	215	237	0.81
Non-Cytoplasmic	238	295	0.65
Transmembrane Helix	296	319	0.80
Cytoplasmic	320	375	0.59
Transmembrane Helix	376	396	0.85
Non-Cytoplasmic	397	397	0.32
Transmembrane Helix	398	415	0.51
Cytoplasmic	416	473	0.75