YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30681260, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLSSYLLS SPPLCKSRFS ATSLVSGIDF ISFSPRTTLS SSSTVLPAIL SLSVKHNRRR  60
   61 NSLQVKSVAS PTETISEFDE MVSGTKRKYY MLGGKGGVGK TSCAASLAVR FANNGHPTLV 120
  121 VSTDPAHSLS DSFAQDLTGG MLVPVEGPEA PLFALEINPE KAREEFRSAS QMNGGTGVKD 180
  181 FMDGMGLGML VEQLGELKLG ELLDTPPPGL DEAIAISKVI QFLESPEYNM FTRIVFDTAP 240
  241 TGHTLRLLSL PDFLDASIGK ILKLRQKITS ATSAIKSVFG KEEKGPDAAD KLEKLRERMV 300
  301 KVRELFRDTE STEFVIVTIP TVMAVSESSR LSASLKKESV PVKRLIVNQL LPPSSSDCKF 360
  361 CSIKRKDQMR ALDMIREDSE LSALTLMEAP LVDMEIRGVP ALRFLGDIIW K

Type	Start	End	Confidence
Signal Peptide	1	17	0.46
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	411	0.97