YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TI221_ARATH
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSSAAEPT TGASSPPVAS DENSTQIQPI RMPTIEEIRA QEVWNNCAVR AVTSGVMGGG  60
   61 LGLMMGLFLG ALDNPITHDT MTARQQFVFT AKQMGQRSWN SCKTFAVMGL VFSAAECIVE 120
  121 KARAKHDTVN TAIAGCVTGG SMSARGGPKA ACIGCAGFAT FSVLIEKFFD RHT

Type	Start	End	Confidence
Cytoplasmic	1	47	0.90
Transmembrane Helix	48	71	0.83
Non-Cytoplasmic	72	146	0.81
Transmembrane Helix	147	165	0.70
Cytoplasmic	166	173	0.56