YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42563875
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	138	0.89
Transmembrane Helix	139	158	0.79
Non-Cytoplasmic	159	162	0.81
Transmembrane Helix	163	184	0.92
Cytoplasmic	185	206	0.83
Transmembrane Helix	207	231	0.79
Non-Cytoplasmic	232	251	0.82
Transmembrane Helix	252	272	0.84
Cytoplasmic	273	277	0.86
Transmembrane Helix	278	300	0.91
Non-Cytoplasmic	301	318	0.83
Transmembrane Helix	319	340	0.89
Cytoplasmic	341	350	0.87
Transmembrane Helix	351	375	0.90
Non-Cytoplasmic	376	395	0.93
Transmembrane Helix	396	418	0.90
Cytoplasmic	419	436	0.85
Transmembrane Helix	437	458	0.90
Non-Cytoplasmic	459	463	0.68
Transmembrane Helix	464	485	0.91
Cytoplasmic	486	493	0.92
Transmembrane Helix	494	516	0.95
Non-Cytoplasmic	517	528	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEEQERDI LIQTDDDDCH VDVSYVNDDD DSNASFSLSQ NDSAFWPQSY RHSVDLLTGV  60
   61 TPPMVSFIQG RSTETSFSSS IASLYKRRPT SIANSFVSST SKQPLLSEKD DVSFLSSQVG 120
  121 LSNTDLSYGE PNFCSFPQSV LNGINVLCGI SLLTMPYAVK EGGWLGLCIL LSFAIITCYT 180
  181 GILLKRCLES SSDLRTYPDI GQAAFGFTGR LIISILLYME LYVCCVEYII MMSDNLSRVF 240
  241 PNITLNIVGV SLDSPQIFAI SATLIVLPTV WLKDLSLLSY LSAGGVFVSI LLALCLFWVG 300
  301 SVDGVGFHTG GKALDLANLP VAIGIFGFGF SGHAVLPSIY SSMKEPSKFP LVLLISFGFC 360
  361 VFFYIAVAIC GYSMFGEAIQ SQFTLNMPQQ YTASKIAVWT AVVVPMTKYA LALTPIVLGL 420
  421 EELMPPSEKM RSYGVSIFIK TILVLSTLVV ALTFPFFAIM GALMGSFLAT LVDFIFPCLC 480
  481 YLSILKGRLS KTQIGICVFI IISGIVSGCC GTYSAIGRLV GELNWMVQ