YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2664222
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWTKSYATLI VAAIINWISV KVHADELSRW CLDNQEICSN LIQNLRDTDD TNAQKRNFLR  60
   61 FGRALAGDHF FRFGRSPYQT EDKRFLRFGR SGGGGGFDNV GLADILKAAL VKVESANQNG 120
  121 LKIRKRRSID AVKDVPEKKS VTDNTEPEAE IKKRNVDNSY ATNEDSADEN LKAADKRFMR 180
  181 FGKRFMRFGK RENADKRFMR FGKRGDEDFG EEEGDDTYGV EDKRFMRFGR GGTEDKRFMR 240
  241 FGRAGEDKRF MRFGKRADEN FGEDEGDETY GVEDKRFMRF GRGGTEDKRF MRFGKSMDND 300
  301 DEKRFMRFGK SAEADKRFMR FGKSLEADKR FMRFGKSGDD EKRFMRFGKS VDGEDKEKRF 360
  361 MRFGKSTEDK RFMRFGRDPA EKRFMRFGKS TTEDKRFMRF GRK

Type	Start	End	Confidence
Signal Peptide	1	24	0.94
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	403	0.99