YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30695009
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR  60
   61 YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV GGRLSYKPPI YDINAPDLYI 120
  121 PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL 180
  181 DIVAYAGYTF TGLCLAVLGK IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS 240
  241 RHHYLLIFVA LAQFPLLIWL GNISVNWLF

Type	Start	End	Confidence
Cytoplasmic	1	117	0.93
Transmembrane Helix	118	139	0.90
Non-Cytoplasmic	140	148	0.76
Transmembrane Helix	149	170	0.88
Cytoplasmic	171	181	0.70
Transmembrane Helix	182	202	0.87
Non-Cytoplasmic	203	208	0.60
Transmembrane Helix	209	226	0.92
Cytoplasmic	227	242	0.88
Transmembrane Helix	243	263	0.93
Non-Cytoplasmic	264	269	0.85