YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZTP50_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.87
Transmembrane Helix	29	48	0.81
Non-Cytoplasmic	49	101	0.82
Transmembrane Helix	102	123	0.92
Cytoplasmic	124	129	0.74
Transmembrane Helix	130	149	0.91
Non-Cytoplasmic	150	155	0.82
Transmembrane Helix	156	175	0.91
Cytoplasmic	176	194	0.75
Transmembrane Helix	195	216	0.77
Non-Cytoplasmic	217	229	0.64
Transmembrane Helix	230	252	0.80
Cytoplasmic	253	260	0.78
Transmembrane Helix	261	282	0.88
Non-Cytoplasmic	283	288	0.67
Transmembrane Helix	289	310	0.88
Cytoplasmic	311	321	0.68
Transmembrane Helix	322	340	0.81
Non-Cytoplasmic	341	353	0.78
Transmembrane Helix	354	374	0.94
Cytoplasmic	375	382	0.71
Transmembrane Helix	383	403	0.91
Non-Cytoplasmic	404	411	0.79
Transmembrane Helix	412	435	0.86
Cytoplasmic	436	454	0.79
Transmembrane Helix	455	477	0.82
Non-Cytoplasmic	478	494	0.66
Transmembrane Helix	495	517	0.68
Cytoplasmic	518	523	0.72
Transmembrane Helix	524	546	0.89
Non-Cytoplasmic	547	552	0.75
Transmembrane Helix	553	572	0.92
Cytoplasmic	573	583	0.90
Transmembrane Helix	584	605	0.90
Non-Cytoplasmic	606	619	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVRSNILRA LIFTVLEKTC LEIKMMHSSC KGLVLLLFLF VVVFIGNTDA NAQWEVSHKV  60
   61 RASPHENMGR NVIDGSGVEK TLHDIGMGEK RGTHNKVSVS TVALFTLAMA AATGLGAVPF 120
  121 FFVELDPQWA GICNGMAAGV MLAASFDLVK EGQEHGSGNW VVTGILAGAL FIWLCKQILE 180
  181 QYGEVSMLDI KGADATKVVL VIGIMTLHSF GEGSGVGVSF AGSKGFSQGL LVTLAIAVHN 240
  241 IPEGLAVSMV LASRGVSPQN AMLWSIITSL PQPLVAVPAF LCADAFSKFL PFCTGFAAGC 300
  301 MIWMVIAEVL PDAFKEASPS QVASAATISV ASMEALSTLF ESFTHDYNSE DASGFFVSLL 360
  361 FGLGPLLGGV FLVASAVTFR LQHALLMGVA SGIAFVLGLW RPLQLLLSAK MGLIPLVSLL 420
  421 AIGAGLSHFT SSTILNVTGR KKSRAGSLIN PVTNFPTSVI TLQSLLACGA VGFHALAEGL 480
  481 ALGVAAPNAY GLGRHMVLPV SLHGLPRGTA VASCVFGATD SWHAALAAAA LIGFVGPISA 540
  541 IGSILAGIDY SGLDHVMVVA CGGLLPSFWQ VIKRAVRLER RKGSVGMVLG LACAVVCLTF 600
  601 TRLVCLHTPY CNSAPEAVR