YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110742101, gi...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRLSFLPLY PKITLTTIPL NTFTSCASSP LIFFATSVVY PSPRLPLKSI PASPYSPLDR  60
   61 SFALTPELLK SFTLEDPTSA DRASSQTNFV WLDLVSDALN SAAVNPKSVL PSPSSLVTKR 120
  121 RCAWRLNLML PQGFRIGPNP SPFCPPPNPL PKLLKPMKPS AGLSPYPLRP RSVFKSVLQS 180
  181 PNFLMLLSFR ESNGRFPVMV MMDLAWISSS LSQNLVDSLS RLVRFLQCLS LVLNRLELFS 240
  241 LWKCPRVLLP TPSIVNLLSS SLLLAPSTSV WAGNGRLAIR IVVCLGGNGS YHCRDKMLSF 300
  301 LWTLSETPLP THRQMAFRVK RIGIMTLSLP SRCYRSLENS QLIHSPFIAL IHVMLIYCLD 360
  361 NLQSLDMLKK YGIMTMSSRS GYRLFLNLVN PSASSTEHFF KSSDALFARA SFDHKMVEDF 420
  421 AKPAFMVESA KASTDFSIIR KLMKLLSLFS CNFLFSLCMN LSLLRF

Type	Start	End	Confidence
Cytoplasmic	1	17	0.46
Transmembrane Helix	18	36	0.53
Non-Cytoplasmic	37	341	0.84
Transmembrane Helix	342	361	0.57
Cytoplasmic	362	444	0.72
Transmembrane Helix	445	464	0.84
Non-Cytoplasmic	465	466	0.73