YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42572745
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLFKLSTR RRIIIVALCI FVPDMIILVS KHVTFKFILK IFLSGDVKRR NSQRIRDLTV  60
   61 LRFAEQSLKL FLETSMVSQG MVSLTKSLCT MTPRVRLKNP NMLQKLKTGS CNFRFRNLRV 120
  121 LCTPKLSQWE PSPFIHASAE EAADIVLDKT ANVFESIVSE SAEEEKVDMS AQQRTNSQVQ 180
  181 VLKWPIWLLG PSVLLTSGMA PTLWLPLSSV FLGSNVVSLL SLIGLDCIFN LGATLFLLMA 240
  241 DSCARPKDPS QSCNSKPPFS YKFWNMFSLI IGFLVPMLLL FGSQSGLLAS LQPQIPFLSS 300
  301 AVILFPYFIL LAVQTLTEIL TWHWQSPVWL VTPVVYEAYR ILQLMRGLTL SAEVNAPVWV 360
  361 VHMLRGLVSW WVLILGMQLM RVAWFAGFAS RTTTGQQPQS VASK

Type	Start	End	Confidence
Cytoplasmic	1	12	0.82
Transmembrane Helix	13	35	0.84
Non-Cytoplasmic	36	75	0.79
Transmembrane Helix	76	90	0.49
Cytoplasmic	91	183	0.66
Transmembrane Helix	184	205	0.89
Non-Cytoplasmic	206	215	0.56
Transmembrane Helix	216	240	0.83
Cytoplasmic	241	260	0.63
Transmembrane Helix	261	283	0.85
Non-Cytoplasmic	284	294	0.53
Transmembrane Helix	295	317	0.82
Cytoplasmic	318	327	0.44
Transmembrane Helix	328	342	0.29
Non-Cytoplasmic	343	366	0.44
Transmembrane Helix	367	388	0.84
Cytoplasmic	389	404	0.58