YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|546575
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSQAVTYTT AAVTAVATGF LAYAIYFNYK RRNDPEFRRQ LRHSARRQAR QEKEYAELSQ  60
   61 QAQRQRIRQM VDEAKEEGFP TTSDEKEAYF LEQVQASKIL GQDPTKAIDT SLTFYKALKV 120
  121 YPTPGDLISI YNKTVAKPIL DILTEIIAYD PNLKIGTNYT GSVDIAELMR EIASAPGISL 180
  181 N

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.52
Transmembrane Helix	7	29	0.61
Cytoplasmic	30	181	0.53