YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTPC3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVNYCPETP LLSSNDHEAI DHKPKLTGMV SSMKSNFFAD LPQKLRSKID PENPLHLDVS  60
   61 KAAGLKEDEK EYYERQLATL KSFEEVESFL ARSDEYTIDE KEEEEDRAER AAQELAMQIS 120
  121 NWANIFLLAL KIYATVKSGS IAIAASTLDS LLDLMAGGIL WFTHLSMKNV NIYKYPIGKL 180
  181 RVQPVGIIIF AAVMATLGFQ VLLVAAEQLI SNEPSEKMNH VQLIWLYSIM LSATAIKLVL 240
  241 WIYCKSSRNH IVRAYAKDHH FDVVTNVLGL VAAVLANAFY WWLDPTGAIL LAIYTIVNWS 300
  301 GTVMENAVSL IGQSAPPEVL QKLTYLVMRQ GGDNIKHVDT VRAYTFGVLY FVEVDIELPE 360
  361 DLPLKEAHAI GESLQIKLEE LPEVERAFVH LDFECHHKPE HSVLSTIPND L

Type	Start	End	Confidence
Cytoplasmic	1	116	0.94
Transmembrane Helix	117	135	0.78
Non-Cytoplasmic	136	140	0.71
Transmembrane Helix	141	165	0.80
Cytoplasmic	166	183	0.88
Transmembrane Helix	184	206	0.90
Non-Cytoplasmic	207	222	0.92
Transmembrane Helix	223	244	0.92
Cytoplasmic	245	260	0.95
Transmembrane Helix	261	282	0.89
Non-Cytoplasmic	283	287	0.78
Transmembrane Helix	288	308	0.72
Cytoplasmic	309	411	0.82