YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAN1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNAIRLLRK CLNSHGVSAS SGGVSALSRD LLNFETTSQV PEKLGSYVVS SQKAQANWYR  60
   61 KILEAWKQAK PRPKTPEEAS RLVIAALKNH QKADVEGLLS FYGLPSPHNL VEVPTEAPVS 120
  121 LPKGVRFELN TLPVDTKSVA DGDTVTVYVS SKDPLVSSSL PKDVSLAAVK RAKAREKKNY 180
  181 TEADALHKTI IASGYRMISF QNEEVLAKKF RIRLSGIDSP ESKMPYGKEA HDELLKMVEG 240
  241 KCLKVLVYTE DRYGRCVGDI YCNGKFVQEV MLKKGLAWHY VAYDKRAELA KWENEARQKR 300
  301 VGLWASSNPE KPWEWRKNKR GGN

Type	Start	End	Confidence
Signal Peptide	1	26	0.57
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	323	0.99