YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WTR26_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.89
Transmembrane Helix	10	28	0.88
Non-Cytoplasmic	29	40	0.73
Transmembrane Helix	41	60	0.93
Cytoplasmic	61	71	0.87
Transmembrane Helix	72	92	0.94
Non-Cytoplasmic	93	101	0.82
Transmembrane Helix	102	123	0.91
Cytoplasmic	124	132	0.92
Transmembrane Helix	133	153	0.90
Non-Cytoplasmic	154	181	0.90
Transmembrane Helix	182	202	0.88
Cytoplasmic	203	213	0.75
Transmembrane Helix	214	235	0.89
Non-Cytoplasmic	236	250	0.87
Transmembrane Helix	251	272	0.92
Cytoplasmic	273	278	0.80
Transmembrane Helix	279	298	0.92
Non-Cytoplasmic	299	303	0.71
Transmembrane Helix	304	323	0.93
Cytoplasmic	324	369	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPIPERAKL HIAMVVFQTG YAGNHVIMRY ALNLGVSKLV FPLYRTIVAF SVLAPSAYFL  60
   61 EKKERPAMKI SFLIQFFLLG LVGITLNQGF YIFGLDNTSP TFASATENVV PAVSFLMAAL 120
  121 LGIEKVEWKR KDGIAKVVGT IVSVAGSLVI TLYKGPTIYQ PSLNIVNQTI KPEEAEEENK 180
  181 NWTLGCLCLM GHCLCWSSWI VLQSPLLKKY PARFSFVSYS CFFAVIQFFG ISAYFERDLE 240
  241 RWKIISGGEL YALLYTGLVG SAMVFAIQIY VVERGGPLFV SAYLPLQTLI AAVLATLALG 300
  301 EHFYLGGLIG AILIMSGLYL VVMGKSWENQ ALCQQQQHMI SSAASDFGDE EDYHNNKPRS 360
  361 PISQPLISS