YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30680336
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSAREVSDG RLTVEGFSVA SRAFADKWKI HNQSFPPWSW VPLINRTLLV SKKQEEGYLS  60
   61 LEKIIILSSL EEEIPEDESL NVATDCLEKE ETVDHTILVP TMENEAHYYD FHIVYSASYK 120
  121 VPVLYFRGYC SGGEPLALDV IKKDVPSCSV SLLLESKWTF ITQEEHPYLN RPWFKLHPCG 180
  181 TEDWIKLLSQ SSSSSGCQMP IVLYLVSWFS VVGQVVGLRI PLEMLN

Type	Start	End	Confidence
Non-Cytoplasmic	1	198	0.76
Transmembrane Helix	199	220	0.77
Cytoplasmic	221	226	0.55