YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18495753
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFFYLFVLF PILLKFCECG PFLPLDRQLN PIDFDPNDDQ QPLDPNQLMD QIEQSQEDTQ  60
   61 QEPIEPQQPT QPSTEPEELQ PETVTVEVPE PVTSEEPKES DQTEEQKHEE PEASPVPEPV 120
  121 DEPPVQPTES TPTKASSSGD GAAPCHGKHH DDDSDGKESK SDHDKRPKDK KPFVPKTSQC 180
  181 CGPFFTNSYK IVVAFDWWLC DKPWQYALTL LALFGFSLLS PCLKAYREVL RAKAIRSFIF 240
  241 DCFLTHLFLF LIAFCAYALD FLLMLVVMTF NVGVFFAVIT GYTVGYLLSS LAYSTLRSHP 300
  301 TRSSSFSRIN EDCC

Type	Start	End	Confidence
Signal Peptide	1	19	0.88
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	203	0.95
Transmembrane Helix	204	226	0.87
Cytoplasmic	227	241	0.81
Transmembrane Helix	242	261	0.90
Non-Cytoplasmic	262	271	0.61
Transmembrane Helix	272	293	0.87
Cytoplasmic	294	314	0.92