YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1834427
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.72
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	625	0.99
Transmembrane Helix	626	649	0.92
Cytoplasmic	650	663	0.96
Transmembrane Helix	664	684	0.93
Non-Cytoplasmic	685	691	0.80
Transmembrane Helix	692	711	0.91
Cytoplasmic	712	736	0.87
Transmembrane Helix	737	759	0.90
Non-Cytoplasmic	760	784	0.98
Transmembrane Helix	785	804	0.89
Cytoplasmic	805	817	0.85
Transmembrane Helix	818	839	0.92
Non-Cytoplasmic	840	846	0.86
Transmembrane Helix	847	868	0.85
Cytoplasmic	869	976	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQKNNNGTI LVVVMVLSWS RVVDLKSPSN THTQDSVSVS LPGDIILGGL FPVHEKGEGA  60
   61 PCGPKVYNRG VQRLEAMLYA IDRVNNDPNI LPGITIGVHI LDTCSRDTYA LNQSLQFVRA 120
  121 SLNNLDTSGY ECADGSSPQL RKNASSGPVF GVIGGSYSSV SLQVANLLRL FHIPQVSPAS 180
  181 TAKTLSDKTR FDLFARTVPP DTFQSVALVD ILKNFNWSYV STIHSEGSYG EYGIEALHKE 240
  241 ATERNVCIAV AEKVPSAADD KVFDSIISKL QKKPNARGVV LFTRAEDARR ILQAAKRANL 300
  301 SQPFHWIASD GWGKQQKLLE GLEDIAEGAI TVELQSEIIA DFDRYMMQLT PETNQRNPWF 360
  361 AEYWEDTFNC VLTSLSVKPD TSNSANSTDN KIGVKAKTEC DDSYRLSEKV GYEQESKTQF 420
  421 VVDAVYAFAY ALHNLHNDRC NTQSDQTTET RKHLQSESVW YRKISTDTKS QACPDMANYD 480
  481 GKEFYNNYLL NVSFIDLAGS EVKFDRQGDG LARYDILNYQ RQENSSGYQY KVIGKWFNGL 540
  541 QLNSETVVWN KETEQPTSAC SLPCEVGMIK KQQGDTCCWI CDSCESFEYV YDEFTCKDCG 600
  601 PGLWPYADKL SCYALDIQYM KWNSLFALIP MAIAIFGIAL TSIVIVLFAK NHDTPLVRAS 660
  661 GRELSYTLLF GILVCYCNTF ALIAKPTIGS CVLQRFGIGV GFSIIYSALL TKTNRISRIF 720
  721 HSASKSAQRL KYISPQSQVV ITTSLIAIQV LITMIWMVVE PPGTRFYYPD RREVILKCKI 780
  781 QDMSFLFSQL YNMILITICT IYAIKTRKIP ENFNESKFIG FTMYTTCIIW LAFAPIYFGT 840
  841 GNSYEVQTTT LCISISLSAS VALVCLYSPK VYILVFHPDK NVRKLTMNST VYRRSAAAVA 900
  901 QGAPTSSGYS RTHAPGTSAL TGGAVGTNAS SSTLPTQNSP HLDEASAQTN VAHKTNGEFL 960
  961 PEVGERVEPI CHIVNK