YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15384797
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWITDAAVS QFPLATVLKQ QGALPTSNMF TALPENRVLR IFQLNALTTQ EEVVEILRGY  60
   61 LLDIFNIGAL QSYRYVYQDE FSFLLDVILF FGSTWRCGQS VGDRMQNLVL RNEIKALESG 120
  121 QSDAVQLVHS LVPSRARLLL YGVLNLFVPY LFRKLQRRAL EEGWEDGGAG VVKRKLAKLL 180
  181 KAVSVSWMII SLLHTLHFLA TAQYRTPVER MLSLRLVYGS QDTRRFTNLI YLNQHIFWQI 240
  241 WSSFISVLNI GRYTSRVTRF LQAFTAKPGN PSLTDNACSA CHNKPTLPQR SNCGHLYCYY 300
  301 CIKSRLLGPG SAKSFRCLRC GTVVSTTTPW AQ

Type	Start	End	Confidence
Cytoplasmic	1	182	0.73
Transmembrane Helix	183	201	0.87
Non-Cytoplasmic	202	235	0.93
Transmembrane Helix	236	254	0.76
Cytoplasmic	255	332	0.80