YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15229470
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.87
Transmembrane Helix	14	35	0.85
Non-Cytoplasmic	36	715	0.86
Transmembrane Helix	716	730	0.25
Cytoplasmic	731	740	0.59
Transmembrane Helix	741	762	0.89
Non-Cytoplasmic	763	788	0.68
Transmembrane Helix	789	809	0.90
Cytoplasmic	810	824	0.63
Transmembrane Helix	825	846	0.76
Non-Cytoplasmic	847	847	0.51
Transmembrane Helix	848	872	0.74
Cytoplasmic	873	921	0.96
Transmembrane Helix	922	941	0.96
Non-Cytoplasmic	942	949	0.78
Transmembrane Helix	950	969	0.92
Cytoplasmic	970	989	0.86
Transmembrane Helix	990	1006	0.83
Non-Cytoplasmic	1007	1012	0.58
Transmembrane Helix	1013	1032	0.74
Cytoplasmic	1033	1048	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDVRFAMSI RPRLRIVGVL ILAAWIGLVA LFGLLKPIKN GCTMTYMYPT YIPISVTDDT  60
   61 TPGRYGLYLY HEGWRKIDFK EHLKKLSGVP VLFIPGNAGS YKQVRSVAAE SDRAFQGGPF 120
  121 ERTFYQEASL LRGGGADTES VDYDLPSQYS NRLDWFAVDL EGEHSAMDGR ILEEHTEYVV 180
  181 YAIHRVGILI ILDQYKESHD TREREGAAAS SKLPHDVILV GHSMGGFVAR AAAVHPRLRK 240
  241 SAVQTILTLS SPHQSPPLAL QPSLGHYFAQ VNREWKKGYE VQTSPGGNYV SDPLLSGVVV 300
  301 VSISGGYNDY QVRSKLESLD GIVPSSHGFM ISSTSMTNVW LSMEHQAILW CNQLVVQVSH 360
  361 TLLSMVDSKT NQPFSDTDKR LWVLTRMLQS ALAQSFNGMT PMEVSHELPI LASKGSTCFL 420
  421 DWRDDALDRD LYIQTSTVTI LAMDGRRRWL DIDLLGSNGK NHFIFVTNLV PCSGVRLHLW 480
  481 PEKEKSNSNL PVCERVLEVT SKMVLIPAGP APKQSEPGSQ TEQAPPSAVL KLGPEDMRGF 540
  541 RFLTISVAPR EAVSGKPPVA VSMAVGQFFN PGDGAVEVSS QSMLLSTYWA KEIFLKEDHP 600
  601 LAYNLSFSTS LGLLPATLSL KTTGCGIKTF GLPDGETGDL DKDILKLKDC HSPIDVINLI 660
  661 IVQFSELCKL RCFPPVALAW DSASGLHVFA NLYSETIVID SSPALWSSQS SEKTTVMLLV 720
  721 DPHCSYTASV HVSAPAMSSR FVLLYGPQIV GFSFAVIMFA LMRQANQWDN KLSVPPLLSA 780
  781 VEYNLEMPSP FLLLAVLPLI SSLFYSFLMG QPIPPLTSFT VAIRILKLNT TILMTLIAVT 840
  841 LVSFVHPALG LFVLLASHAL CCHNSMCCIM MASKRKESLD QKNEAERKTR HPSSREDPVS 900
  901 GDLSEKSFVE TQADIFNHRH GLLILHLLAA LMFVPSLAAW FQRIGTGQSF PWFADSALCV 960
  961 GVIFHGILNS RPESSILRSF PFFSGHQIRP HHIYLLAGYY CFFSGLELAP YKVFYAIASL1020
 1021 GYISLTLKIS QVNKNDLRFR TKSRIHRN