YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30688378
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	148	0.66
Transmembrane Helix	149	169	0.88
Non-Cytoplasmic	170	181	0.50
Transmembrane Helix	182	200	0.86
Cytoplasmic	201	215	0.49
Transmembrane Helix	216	241	0.78
Non-Cytoplasmic	242	258	0.62
Transmembrane Helix	259	279	0.93
Cytoplasmic	280	287	0.51
Transmembrane Helix	288	311	0.84
Non-Cytoplasmic	312	316	0.57
Transmembrane Helix	317	339	0.86
Cytoplasmic	340	351	0.61
Transmembrane Helix	352	373	0.90
Non-Cytoplasmic	374	380	0.52
Transmembrane Helix	381	401	0.87
Cytoplasmic	402	440	0.71
Transmembrane Helix	441	463	0.74
Non-Cytoplasmic	464	496	0.58
Transmembrane Helix	497	518	0.89
Cytoplasmic	519	526	0.91
Transmembrane Helix	527	547	0.83
Non-Cytoplasmic	548	552	0.73
Transmembrane Helix	553	573	0.88
Cytoplasmic	574	582	0.87
Transmembrane Helix	583	605	0.93
Non-Cytoplasmic	606	613	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIHFHHHQY HHQLHSHHPW PISHLYMTLP YRFSSVRNHS LLLKTSHLCT PRSALGCCFS  60
   61 PKESPFFRKN TAQFLSPQKH TSLPLKLVCP LASFSSYADS EGEEQHHADQ PIQNPHESST 120
  121 VSNESDGKGN AEATGDFSGM AQAFHISSTT ARAISIVIAF SALTLPIFMK SLGQGLALKT 180
  181 KLLSYATLLF GFYMAWNIGA NDVANAMGTS VGSGALTIRQ AVMTAAVLEF SGALLMGTHV 240
  241 TSTMQKGILM ANVFQGKDML LFAGLLSSLA AAGTWLQVAS YYGWPVSTTH CIVGSMVGFG 300
  301 LVYGGAGAVF WSSLAKVASS WVISPILGAL VSFLVYKCIR RFVYSAPNPG QAAAAAAPVA 360
  361 VFVGVASISS AALPLSKIFP IALSQALACG VAGAIVFDRI IRKQLGHLLA KTKSPETSQN 420
  421 QPKTIGFLSD IAGPTGTQLE IVYGIFGYMQ VLSACFMSFA HGGNDVSNAI GPLAAALSIL 480
  481 QNGAAAGGAE IVIPMDVLAW GGFGIVAGLT MWGYRVIATI GKKITELTPT RGFAAEFAAA 540
  541 SVVLFASKLG LPISATHTLV GAVMGVGFAR GLNSVRAETV REIVASWLVT IPVGATLAVI 600
  601 YTWIFTKILS FVL