YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHX3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.52
Transmembrane Helix	21	43	0.93
Non-Cytoplasmic	44	51	0.47
Transmembrane Helix	52	72	0.92
Cytoplasmic	73	78	0.46
Transmembrane Helix	79	101	0.72
Non-Cytoplasmic	102	109	0.39
Transmembrane Helix	110	132	0.90
Cytoplasmic	133	145	0.37
Transmembrane Helix	146	168	0.54
Non-Cytoplasmic	169	217	0.46
Transmembrane Helix	218	240	0.92
Cytoplasmic	241	248	0.52
Transmembrane Helix	249	268	0.50
Non-Cytoplasmic	269	269	0.53
Transmembrane Helix	270	291	0.85
Cytoplasmic	292	303	0.73
Transmembrane Helix	304	323	0.89
Non-Cytoplasmic	324	341	0.87
Transmembrane Helix	342	366	0.86
Cytoplasmic	367	383	0.89
Transmembrane Helix	384	405	0.88
Non-Cytoplasmic	406	416	0.78
Transmembrane Helix	417	438	0.92
Cytoplasmic	439	503	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIGLSTMLE KTEALFASDH ASVVSMNLFV ALLCACIVLG HLLEETRWMN ESITALIIGS  60
   61 CTGIVILLIS GGKSSRILVF SEDLFFIYLL PPIIFNAGFQ VKKKQFFRNF MTIMLFGAIG 120
  121 TLISFVIISF GAKHLFEKMN IGDLTIADYL AIGAIFSATD SVCTLQVLNQ DETPLLYSLV 180
  181 FGEGVVNDAT SVVLFNAIQR FDLTNINSAI ALEFAGNFFY LFILSTALGV AAGLLSAFVI 240
  241 KKLYIGRHST DREVALMMLL AYLSYMLAEL FHLSSILTVF FCGIVMSHYT WHNVTDKSKV 300
  301 TTKHTFAAMS FLAEIFIFLY VGMDALDIEK WDVVRNSPGQ SIGVSSILLG LILLGRAAFV 360
  361 FPLSFLSNLT KSSPDEKIDL KKQVTIWWAG LMRGAVSMAL AYNQFTTSGH TKVLGNAIMI 420
  421 TSTITVVLFS TVVFGLLTKP LVKHLQPSSK QSSTTALQIT LRSSFHDPIL HEPLLSTQGQ 480
  481 SEYDPEQHVS FRMFWKSPSR FTH