YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56381977, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRRGVSAV NVVFGWLRQQ SNKVKIALGI IISLILVVLL KFTVRNHNHF FIASELIHAA  60
   61 GILILIYKLT RQKTCSGLSL KSQEVTAIFL AVRLICSINM EGDIHTVLDF ATLVSTLWVI 120
  121 YMIRYKLKAS YIKSLDTCYN YYVLVPSAIL ALIINPSTSY SYFHRILWAF CVYTESVSVL 180
  181 PQLRLMQNAQ IIEPFTAHYV FALGIARFLA CAHWIIQVVE TRGHYLWLLG AGYFWFPVAL 240
  241 LAEIVQTFIL ADFCYYYVKS VMEGQLVLKM PV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	43	0.88
Non-Cytoplasmic	44	49	0.80
Transmembrane Helix	50	69	0.89
Cytoplasmic	70	77	0.82
Transmembrane Helix	78	97	0.75
Non-Cytoplasmic	98	104	0.67
Transmembrane Helix	105	125	0.82
Cytoplasmic	126	137	0.88
Transmembrane Helix	138	158	0.87
Non-Cytoplasmic	159	165	0.70
Transmembrane Helix	166	185	0.65
Cytoplasmic	186	194	0.66
Transmembrane Helix	195	216	0.93
Non-Cytoplasmic	217	232	0.57
Transmembrane Helix	233	256	0.76
Cytoplasmic	257	272	0.68