YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18495789
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFFYLFVLF PILLKFCECG PFLPLDRQLN PIDFDPNDDQ QPLDPNQLID QAEQSQESTQ  60
   61 QESIEPQQPT QPSTEPEELE PETVTVEVPE PVTSEEPKES TQTEEPTETQ DSKQEPTEQP 120
  121 VDEPPVQPTE STPTKASSSG DGAAPCHEKH HDDDSDGKES KSDHDKRPKD KKPFVPKTSQ 180
  181 CCGSFFTNSY KIVVAFDWWL CDKPWQYALT LLALFGFSLL SPCLKAYREV LRAKAIRSFI 240
  241 FDCFLTHLFL FLIAFCAYAL DFLLMLVVMT FNVGVFFAVI TGYTVGYLVS SLAYSTLRSH 300
  301 PARSSSFSRI NEDCC

Type	Start	End	Confidence
Signal Peptide	1	19	0.86
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	204	0.92
Transmembrane Helix	205	227	0.87
Cytoplasmic	228	242	0.82
Transmembrane Helix	243	262	0.90
Non-Cytoplasmic	263	272	0.62
Transmembrane Helix	273	295	0.87
Cytoplasmic	296	315	0.94