YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIP71_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGEARSRVV DQEAGSTPST LRDEDHPSRQ RLFGCLPYDI DLNPLRIVMA ELVGTFILMF  60
   61 SVCGVISSTQ LSGGHVGLLE YAVTAGLSVV VVVYSIGHIS GAHLNPSITI AFAVFGGFPW 120
  121 SQVPLYITAQ TLGATAATLV GVSVYGVNAD IMATKPALSC VSAFFVELIA TSIVVFLASA 180
  181 LHCGPHQNLG NLTGFVIGTV ISLGVLITGP ISGGSMNPAR SLGPAVVAWD FEDLWIYMTA 240
  241 PVIGAIIGVL TYRSISLKTR PCPSPVSPSV SSLLR

Type	Start	End	Confidence
Cytoplasmic	1	51	0.82
Transmembrane Helix	52	71	0.89
Non-Cytoplasmic	72	80	0.53
Transmembrane Helix	81	115	0.71
Cytoplasmic	116	116	0.21
Transmembrane Helix	117	147	0.67
Non-Cytoplasmic	148	159	0.53
Transmembrane Helix	160	181	0.90
Cytoplasmic	182	191	0.52
Transmembrane Helix	192	213	0.91
Non-Cytoplasmic	214	233	0.67
Transmembrane Helix	234	255	0.89
Cytoplasmic	256	275	0.72