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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CERK1_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKISLIAP ILLLFSFFFA VESKCRTSCP LALASYYLEN GTTLSVINQN LNSSIAPYDQ  60
   61 INFDPILRYN SNIKDKDRIQ MGSRVLVPFP CECQPGDFLG HNFSYSVRQE DTYERVAISN 120
  121 YANLTTMESL QARNPFPATN IPLSATLNVL VNCSCGDESV SKDFGLFVTY PLRPEDSLSS 180
  181 IARSSGVSAD ILQRYNPGVN FNSGNGIVYV PGRDPNGAFP PFKSSKQDGV GAGVIAGIVI 240
  241 GVIVALLLIL FIVYYAYRKN KSKGDSFSSS IPLSTKADHA SSTSLQSGGL GGAGVSPGIA 300
  301 AISVDKSVEF SLEELAKATD NFNLSFKIGQ GGFGAVYYAE LRGEKAAIKK MDMEASKQFL 360
  361 AELKVLTRVH HVNLVRLIGY CVEGSLFLVY EYVENGNLGQ HLHGSGREPL PWTKRVQIAL 420
  421 DSARGLEYIH EHTVPVYVHR DIKSANILID QKFRAKVADF GLTKLTEVGG SATRGAMGTF 480
  481 GYMAPETVYG EVSAKVDVYA FGVVLYELIS AKGAVVKMTE AVGEFRGLVG VFEESFKETD 540
  541 KEEALRKIID PRLGDSYPFD SVYKMAELGK ACTQENAQLR PSMRYIVVAL STLFSSTGNW 600
  601 DVGNFQNEDL VSLMSGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle