YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACA9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	201	0.92
Transmembrane Helix	202	223	0.89
Non-Cytoplasmic	224	231	0.77
Transmembrane Helix	232	252	0.90
Cytoplasmic	253	384	0.89
Transmembrane Helix	385	406	0.92
Non-Cytoplasmic	407	441	0.86
Transmembrane Helix	442	464	0.81
Cytoplasmic	465	859	0.90
Transmembrane Helix	860	882	0.71
Non-Cytoplasmic	883	889	0.62
Transmembrane Helix	890	909	0.67
Cytoplasmic	910	936	0.69
Transmembrane Helix	937	961	0.80
Non-Cytoplasmic	962	973	0.63
Transmembrane Helix	974	988	0.39
Cytoplasmic	989	1007	0.50
Transmembrane Helix	1008	1031	0.89
Non-Cytoplasmic	1032	1038	0.47
Transmembrane Helix	1039	1062	0.87
Cytoplasmic	1063	1086	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSSSNGLL LTSMSGRHDD MEAGSAKTEE HSDHEELQHD PDDPFDIDNT KNASVESLRR  60
   61 WRQAALVLNA SRRFRYTLDL NKEEHYDNRR RMIRAHAQVI RAALLFKLAG EQQIAFGSST 120
  121 PAASTGNFDI DLEKLVSMTR NQNMSNLQQY GGVKGVAEKL KSNMEQGINE DEKEVIDRKN 180
  181 AFGSNTYPKK KGKNFFMFLW EAWQDLTLII LIIAAVTSLA LGIKTEGLKE GWLDGGSIAF 240
  241 AVLLVIVVTA VSDYRQSLQF QNLNDEKRNI QLEVMRGGRT VKISIYDVVV GDVIPLRIGD 300
  301 QVPADGVLIS GHSLAIDESS MTGESKIVHK DQKSPFLMSG CKVADGVGNM LVTGVGINTE 360
  361 WGLLMASISE DTGEETPLQV RLNGLATFIG IVGLSVALVV LVALLVRYFT GTTQDTNGAT 420
  421 QFIKGTTSIS DIVDDCVKIF TIAVTIVVVA VPEGLPLAVT LTLAYSMRKM MADKALVRRL 480
  481 SACETMGSAT TICSDKTGTL TLNQMTVVET YAGGSKMDVA DNPSGLHPKL VALISEGVAQ 540
  541 NTTGNIFHPK DGGEVEISGS PTEKAILSWA YKLGMKFDTI RSESAIIHAF PFNSEKKRGG 600
  601 VAVLRGDSEV FIHWKGAAEI VLACCTQYMD SNGTLQSIES QKEFFRVAID SMAKNSLRCV 660
  661 AIACRTQELN QVPKEQEDLD KWALPEDELI LLAIVGIKDP CRPGVREAVR ICTSAGVKVR 720
  721 MVTGDNLQTA KAIALECGIL SSDTEAVEPT IIEGKVFREL SEKEREQVAK KITVMGRSSP 780
  781 NDKLLLVQAL RKNGDVVAVT GDGTNDAPAL HEADIGLSMG ISGTEVAKES SDIIILDDNF 840
  841 ASVVKVVRWG RSVYANIQKF IQFQLTVNVA ALIINVVAAM SSGDVPLKAV QLLWVNLIMD 900
  901 TLGALALATE PPTDHLMHRT PVGRREPLIT NIMWRNLLVQ SFYQVAVLLV LNFAGLSILG 960
  961 LNHENHAHAV EVKNTMIFNA FVMCQIFNEF NARKPDEMNV FRGVNKNPLF VAIVGVTFIL1020
 1021 QIIIVTFLGK FAHTVRLGWQ LWLASIIIGL VSWPLAIVGK LIPVPKTPMS VYFKKPFRKY1080
 1081 KASRNA