YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPP4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKIMLGSHS VKSHGWKVAR EHLCDWLILV VLGLIDIVLN VIEPFHRYIG PDMLTDLTFP  60
   61 FYEDTIPMWA VPIICILVPI CIFIVYYYYR RDVYDLHHAI LGIGFSCLVT GVTTDSIKDA 120
  121 VGRPRPNFFY RCFPNGKPKF HPDTKDVVCH GVKKIIKEGY KSFPSGHTSW SFAGLTFLAW 180
  181 YLSGKIKVFD RRGHVAKLCL VFLPILISIL IGISRVDDYW HHWTDVFAGA IIGIFVASFS 240
  241 YLHFFPYPYD ENGWAPHAYF RMLAERSTGR ATTMTRTGSR GMLGNDVEPG NSASSPHDRH 300
  301 RESTDSDF

Type	Start	End	Confidence
Cytoplasmic	1	21	0.97
Transmembrane Helix	22	42	0.91
Non-Cytoplasmic	43	65	0.90
Transmembrane Helix	66	89	0.90
Cytoplasmic	90	95	0.90
Transmembrane Helix	96	117	0.84
Non-Cytoplasmic	118	165	0.93
Transmembrane Helix	166	184	0.89
Cytoplasmic	185	193	0.84
Transmembrane Helix	194	214	0.93
Non-Cytoplasmic	215	225	0.72
Transmembrane Helix	226	245	0.95
Cytoplasmic	246	308	0.97