YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30678579
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKRTENGS ESGPATSHVP VDRFGFLKQE HANSPERFSK SKTTSSTDHD REERKVRKWR  60
   61 KMIGVGGSDW KHYVRRKPNV VRRRIRKGIP DCLRGLVWQL ISGSRDLLLM NPGVYEQLVI 120
  121 YETSASELDI IRDISRTFPS HVFFQKRHGP GQRSLYNVLK AYSVYDRDVG YVQGMGFIAG 180
  181 LLLLYMSEED AFWLLVALLK GAVHAPMEGL YHAGLPLVQQ YLFQLESLVK ELIPKLGEHF 240
  241 TQEMINPSMY ASQWFITVFS YSFPFPLALR IWDVFLSEVK LPFEKLIHAL KTFPEDAMNP 300
  301 DTLLPLAYSI KVSKRLEELT LEYQKTNAKP VQP

Type	Start	End	Confidence
Cytoplasmic	1	168	0.52
Transmembrane Helix	169	186	0.38
Non-Cytoplasmic	187	253	0.82
Transmembrane Helix	254	272	0.55
Cytoplasmic	273	333	0.54