YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42564151
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKDNDSGSG SNPGQVSNYL IVRPHRGGYI DLFRYGVRDD QTSKAKFLEM PDNREWSTIT  60
   61 IDEEAEDHRW VIVVSILVRK IIRLLRTPME FTGFVVDFFL NLFSANGGFF GLLLRLIQAK 120
  121 VVIPERGSVT FVSTIGQLDG RISLYKEWNF VEHLEGIDSV DSGRVKIELG SRGLMDLCVM 180
  181 ASKLAYENAK VVENVVDLHW KMNLVEFLDC WNDYQKQMST QVFVFTDKQK DANLIVISFR 240
  241 GTEPFDADDW GTDFDYSWYE VPNVGKLHMG FLEAMGLGNR DDTTTFHYNL FEQTSSEEEN 300
  301 SKKNLLDMVE RSAYYAVRVI LKRLLSEHEN ARFVVTGHSL GGALAILFPT LLVLNEETEI 360
  361 MKRLLGVYTF GQPRIGNREV GLFMKAQLNQ PVDRYFRVVY CNDIVPRLPY DDKTFLYKHF 420
  421 GLCLFYDSFY NETKAEDEPD PNPYGLRYKI LGHVIAVWEL VRGLTMGYTH GPDYKEGWFR 480
  481 ILFRLMGLVI PGLSDHCMTD YVNSVRLGPD NELQMSSL

Type	Start	End	Confidence
Cytoplasmic	1	90	0.59
Transmembrane Helix	91	113	0.56
Non-Cytoplasmic	114	518	0.76