YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42570801
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVELEIVWLV RGAWITVWIV SILPLVIASI PTSKLNSFRE LVLSFAGRGK ILHPSSQFTI  60
   61 PQKCFAHFYV IGVVWTTLLL AATWMYACKM APLSSEEFQL SDIASRLAGG SDVFSVHKSN 120
  121 MTPVEHRFKV WRAVFLLLLM EIHVLRRLIE SFYVFKYSPS ARMHILGYFA GLFFYVTAPL 180
  181 SLCSNIAPEV AGFVGNQVAE FIANGKSHTS APEFNLLSSI SPLMKLGSLQ WIGGAIFLWG 240
  241 WIHQRRCHAI LGSLRENPSQ AKEYIIPYGD WFGMVSSPHF LAEIVLYAGL LIASGGTDIT 300
  301 IWLLFGFVAA NLTYAAGETH RWYLRKFENY PANRHAIFPY VY

Type	Start	End	Confidence
Cytoplasmic	1	6	0.68
Transmembrane Helix	7	31	0.81
Non-Cytoplasmic	32	64	0.63
Transmembrane Helix	65	88	0.89
Cytoplasmic	89	164	0.66
Transmembrane Helix	165	187	0.86
Non-Cytoplasmic	188	222	0.87
Transmembrane Helix	223	243	0.88
Cytoplasmic	244	263	0.90
Transmembrane Helix	264	291	0.67
Non-Cytoplasmic	292	298	0.56
Transmembrane Helix	299	317	0.85
Cytoplasmic	318	342	0.84