YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLKMVFFK ILFISLMAGL AMKGSKINVE DLQKFSLHHT QNNLQTISLL LFLVVFVWIL  60
   61 YMLTRPKPVY LVDFSCYLPP SHLKVSIQTL MGHARRAREA GMCWKNKESD HLVDFQEKIL 120
  121 ERSGLGQETY IPEGLQCFPL QQGMGASRKE TEEVIFGALD NLFRNTGVKP DDIGILVVNS 180
  181 STFNPTPSLA SMIVNKYKLR DNIKSLNLGG MGCSAGVIAV DVAKGLLQVH RNTYAIVVST 240
  241 ENITQNLYLG KNKSMLVTNC LFRVGGAAVL LSNRSRDRNR AKYELVHTVR IHTGSDDRSF 300
  301 ECATQEEDED GIIGVTLTKN LPMVAARTLK INIATLGPLV LPLKEKLAFF ITFVKKKYFK 360
  361 PELRNYTPDF KLAFEHFCIH AGGRALIDEL EKNLKLSPLH VEASRMTLHR FGNTSSSSIW 420
  421 YELAYTEAKG RMKEGDRIWQ IALGSGFKCN SSVWVALRDV KPSANSPWED CMDRYPVEID 480
  481 I

Type	Start	End	Confidence
Cytoplasmic	1	6	0.75
Transmembrane Helix	7	25	0.85
Non-Cytoplasmic	26	43	0.73
Transmembrane Helix	44	64	0.85
Cytoplasmic	65	205	0.74
Transmembrane Helix	206	223	0.38
Non-Cytoplasmic	224	481	0.57